Tue Oct 2 17:28:39 PDT 2007 **Summary Stats** Annotation: ann_list.txt Predictions: pred_list.txt Gene Sensitivity 74.63% Gene Specificity 30.86% Transcript Sensitivity 72.96% Transcript Specificity 30.86% Exon Sensitivity 90.05% Exon Specificity 33.31% Nucleotide Sensitivity 97.96% Nucleotide Specificity 36.02% **General Stats** Predictions: ann_list.txt pred_list.txt Gene All Count 1147.00 2780.00 Total Transcripts 1176.00 2780.00 Transcripts Per 1.03 1.00 Transcript All Count 1176.00 2780.00 Average Length 4625.75 3100.71 Median Length 2218.00 1642.00 Total Length 5439886.00 8619983.00 Average Coding Length 1306.53 1476.70 Median Coding Length 1152.00 1149.00 Total Coding Length 1536483.00 4105219.00 Average Score 329.26 3.67 Total Score 387212.00 10193.15 Ave Exons Per 3.30 3.70 Med Exons Per 3.00 3.00 Total Exons 3877.00 10296.00 Complete Count 1158.00 2756.00 Average Length 4531.01 3074.99 Median Length 2218.00 1642.00 Total Length 5246911.00 8474670.00 Average Coding Length 1312.33 1478.80 Median Coding Length 1155.00 1149.00 Total Coding Length 1519683.00 4075569.00 Average Score 329.03 3.67 Total Score 381013.00 10113.74 Ave Exons Per 3.29 3.71 Med Exons Per 3.00 3.00 Total Exons 3815.00 10212.00 Incomplete Count 18.00 24.00 Average Length 10720.83 6054.71 Median Length 2251.00 1978.00 Total Length 192975.00 145313.00 Average Coding Length 933.33 1235.42 Median Coding Length 774.00 1168.00 Total Coding Length 16800.00 29650.00 Average Score 344.39 3.31 Total Score 6199.00 79.42 Ave Exons Per 3.44 3.50 Med Exons Per 3.00 3.00 Total Exons 62.00 84.00 Single Exon Count 224.00 507.00 Average Length 2093.37 893.39 Median Length 1503.00 699.00 Total Length 468915.00 452949.00 Average Coding Length 1018.07 890.39 Median Coding Length 852.00 696.00 Total Coding Length 228048.00 451428.00 Average Score 99.69 0.98 Total Score 22329.90 494.95 Ave Exons Per 1.00 1.00 Med Exons Per 1.00 1.00 Total Exons 224.00 507.00 Exon All Count 3809.00 10296.00 Average Length 398.23 398.72 Median Length 225.00 214.00 Total Length 1516864.00 4105219.00 Average Score 99.87 0.99 Total Score 380419.40 10193.15 Initial Count 937.00 2257.00 Average Length 270.16 264.64 Median Length 141.00 132.00 Total Length 253141.00 597288.00 Average Score 99.81 0.98 Total Score 93525.70 2217.37 Internal Count 1725.00 5267.00 Average Length 346.70 381.28 Median Length 211.00 212.00 Total Length 598057.00 2008199.00 Average Score 99.96 0.99 Total Score 172437.00 5240.02 Terminal Count 924.00 2265.00 Average Length 474.09 462.83 Median Length 304.00 274.00 Total Length 438061.00 1048304.00 Average Score 99.81 0.99 Total Score 92226.80 2240.81 Single Count 224.00 507.00 Average Length 1018.07 890.39 Median Length 852.00 696.00 Total Length 228048.00 451428.00 Average Score 99.69 0.98 Total Score 22329.90 494.95 UTR3 Count 1220.00 0.00 Average Length 325.34 0.00 Median Length 192.00 0.00 Total Length 396916.00 0.00 Average Score 99.76 0.00 Total Score 121701.50 0.00 UTR5 Count 1534.00 0.00 Average Length 160.87 0.00 Median Length 94.00 0.00 Total Length 246777.00 0.00 Average Score 99.79 0.00 Total Score 153082.40 0.00 Intron Count 2648.00 7516.00 Average Length 689.42 599.58 Median Length 70.00 74.00 Total Length 1825572.00 4506448.00 Average Score 0.00 0.00 Total Score 0.00 0.00 InframeOptional Count 1.00 0.00 Average Length 30.00 0.00 Median Length 30.00 0.00 Total Length 30.00 0.00 Average Score 100.00 0.00 Total Score 100.00 0.00 FrameshiftOptional Count 0.00 0.00 Average Length 0.00 0.00 Median Length 0.00 0.00 Total Length 0.00 0.00 Average Score 0.00 0.00 Total Score 0.00 0.00 Nuc All Count 1509298.00 4105219.00 Initial Count 251422.00 597288.00 Internal Count 596183.00 2008199.00 Terminal Count 438049.00 1048304.00 Single Count 228048.00 451428.00 UTR3 Count 388507.00 0.00 UTR5 Count 245286.00 0.00 Intron Count 1786495.00 4506448.00 InframeOptional Count 30.00 0.00 FrameshiftOptional Count 0.00 0.00 Signal Splice Acceptor Count 2649.00 7532.00 Splice Donor Count 2662.00 7524.00 Start Codon Count 1163.00 2764.00 Stop Codon Count 1168.00 2772.00 **Detailed Stats** Annotation: ann_list.txt Predictions: pred_list.txt Gene All Count 2780.00 Ann Count 1147.00 Total Transcripts 2780.00 Transcripts Per 1.00 Consistent Pred Count 858.00 Consistent Ann Count 856.00 Consistent Specificity 30.86% Consistent Sensitivity 74.63% Exact Pred Count 855.00 Exact Ann Count 853.00 Exact Specificity 30.76% Exact Sensitivity 74.37% Full Exact Pred Count 0.00 Full Exact Ann Count 0.00 Full Exact Specificity 0.00% Full Exact Sensitivity 0.00% Genomic Overlap Pred Count 1213.00 Genomic Overlap Ann Count 1120.00 Genomic Overlap Specificity 43.63% Genomic Overlap Sensitivity 97.65% CDS Overlap Pred Count 1157.00 CDS Overlap Ann Count 1113.00 CDS Overlap Specificity 41.62% CDS Overlap Sensitivity 97.04% All Introns Pred Count 734.00 All Introns Ann Count 733.00 All Introns Specificity 26.40% All Introns Sensitivity 63.91% Exact UTR5 Pred Count 1.00 Exact UTR5 Ann Count 1.00 Exact UTR5 Specificity 0.04% Exact UTR5 Sensitivity 0.09% Exact UTR3 Pred Count 0.00 Exact UTR3 Ann Count 0.00 Exact UTR3 Specificity 0.00% Exact UTR3 Sensitivity 0.00% Exact Intron Pred Count 931.00 Exact Intron Ann Count 905.00 Exact Intron Specificity 33.49% Exact Intron Sensitivity 78.90% Exact Exon Pred Count 1113.00 Exact Exon Ann Count 1072.00 Exact Exon Specificity 40.04% Exact Exon Sensitivity 93.46% Start Codon Pred Count 967.00 Start Codon Ann Count 962.00 Start Codon Specificity 34.78% Start Codon Sensitivity 83.87% Stop Codon Pred Count 1052.00 Stop Codon Ann Count 1049.00 Stop Codon Specificity 37.84% Stop Codon Sensitivity 91.46% Start Stop Pred Count 888.00 Start Stop Ann Count 886.00 Start Stop Specificity 31.94% Start Stop Sensitivity 77.24% Transcript All Count 2780.00 Ann Count 1176.00 Average Length 3100.71 Median Length 1642.00 Total Length 8619983.00 Average Coding Length 1476.70 Median Coding Length 1149.00 Total Coding Length 4105219.00 Average Score 3.67 Total Score 10193.15 Ave Exons Per 3.70 Med Exons Per 3.00 Total Exons 10296.00 Consistent Pred Count 858.00 Consistent Ann Count 858.00 Consistent Specificity 30.86% Consistent Sensitivity 72.96% Exact Pred Count 855.00 Exact Ann Count 855.00 Exact Specificity 30.76% Exact Sensitivity 72.70% Full Exact Pred Count 0.00 Full Exact Ann Count 0.00 Full Exact Specificity 0.00% Full Exact Sensitivity 0.00% Genomic Overlap Pred Count 1213.00 Genomic Overlap Ann Count 1148.00 Genomic Overlap Specificity 43.63% Genomic Overlap Sensitivity 97.62% CDS Overlap Pred Count 1157.00 CDS Overlap Ann Count 1141.00 CDS Overlap Specificity 41.62% CDS Overlap Sensitivity 97.02% All Introns Pred Count 734.00 All Introns Ann Count 736.00 All Introns Specificity 26.40% All Introns Sensitivity 62.59% Exact UTR5 Pred Count 1.00 Exact UTR5 Ann Count 1.00 Exact UTR5 Specificity 0.04% Exact UTR5 Sensitivity 0.09% Exact UTR3 Pred Count 0.00 Exact UTR3 Ann Count 0.00 Exact UTR3 Specificity 0.00% Exact UTR3 Sensitivity 0.00% Exact Intron Pred Count 931.00 Exact Intron Ann Count 928.00 Exact Intron Specificity 33.49% Exact Intron Sensitivity 78.91% Exact Exon Pred Count 1113.00 Exact Exon Ann Count 1096.00 Exact Exon Specificity 40.04% Exact Exon Sensitivity 93.20% Start Codon Pred Count 967.00 Start Codon Ann Count 969.00 Start Codon Specificity 34.78% Start Codon Sensitivity 82.40% Stop Codon Pred Count 1052.00 Stop Codon Ann Count 1069.00 Stop Codon Specificity 37.84% Stop Codon Sensitivity 90.90% Start Stop Pred Count 888.00 Start Stop Ann Count 888.00 Start Stop Specificity 31.94% Start Stop Sensitivity 75.51% Complete Count 2756.00 Ann Count 1158.00 Average Length 3074.99 Median Length 1642.00 Total Length 8474670.00 Average Coding Length 1478.80 Median Coding Length 1149.00 Total Coding Length 4075569.00 Average Score 3.67 Total Score 10113.74 Ave Exons Per 3.71 Med Exons Per 3.00 Total Exons 10212.00 Consistent Pred Count 853.00 Consistent Ann Count 853.00 Consistent Specificity 30.95% Consistent Sensitivity 73.66% Exact Pred Count 853.00 Exact Ann Count 853.00 Exact Specificity 30.95% Exact Sensitivity 73.66% Full Exact Pred Count 0.00 Full Exact Ann Count 0.00 Full Exact Specificity 0.00% Full Exact Sensitivity 0.00% Genomic Overlap Pred Count 1199.00 Genomic Overlap Ann Count 1133.00 Genomic Overlap Specificity 43.51% Genomic Overlap Sensitivity 97.84% CDS Overlap Pred Count 1145.00 CDS Overlap Ann Count 1129.00 CDS Overlap Specificity 41.55% CDS Overlap Sensitivity 97.50% All Introns Pred Count 728.00 All Introns Ann Count 731.00 All Introns Specificity 26.42% All Introns Sensitivity 63.13% Exact UTR5 Pred Count 1.00 Exact UTR5 Ann Count 1.00 Exact UTR5 Specificity 0.04% Exact UTR5 Sensitivity 0.09% Exact UTR3 Pred Count 0.00 Exact UTR3 Ann Count 0.00 Exact UTR3 Specificity 0.00% Exact UTR3 Sensitivity 0.00% Exact Intron Pred Count 921.00 Exact Intron Ann Count 918.00 Exact Intron Specificity 33.42% Exact Intron Sensitivity 79.27% Exact Exon Pred Count 1102.00 Exact Exon Ann Count 1085.00 Exact Exon Specificity 39.99% Exact Exon Sensitivity 93.70% Start Codon Pred Count 964.00 Start Codon Ann Count 966.00 Start Codon Specificity 34.98% Start Codon Sensitivity 83.42% Stop Codon Pred Count 1044.00 Stop Codon Ann Count 1060.00 Stop Codon Specificity 37.88% Stop Codon Sensitivity 91.54% Start Stop Pred Count 888.00 Start Stop Ann Count 888.00 Start Stop Specificity 32.22% Start Stop Sensitivity 76.68% Incomplete Count 24.00 Ann Count 18.00 Average Length 6054.71 Median Length 1978.00 Total Length 145313.00 Average Coding Length 1235.42 Median Coding Length 1168.00 Total Coding Length 29650.00 Average Score 3.31 Total Score 79.42 Ave Exons Per 3.50 Med Exons Per 3.00 Total Exons 84.00 Consistent Pred Count 5.00 Consistent Ann Count 5.00 Consistent Specificity 20.83% Consistent Sensitivity 27.78% Exact Pred Count 2.00 Exact Ann Count 2.00 Exact Specificity 8.33% Exact Sensitivity 11.11% Full Exact Pred Count 0.00 Full Exact Ann Count 0.00 Full Exact Specificity 0.00% Full Exact Sensitivity 0.00% Genomic Overlap Pred Count 14.00 Genomic Overlap Ann Count 15.00 Genomic Overlap Specificity 58.33% Genomic Overlap Sensitivity 83.33% CDS Overlap Pred Count 12.00 CDS Overlap Ann Count 12.00 CDS Overlap Specificity 50.00% CDS Overlap Sensitivity 66.67% All Introns Pred Count 6.00 All Introns Ann Count 5.00 All Introns Specificity 25.00% All Introns Sensitivity 27.78% Exact UTR5 Pred Count 0.00 Exact UTR5 Ann Count 0.00 Exact UTR5 Specificity 0.00% Exact UTR5 Sensitivity 0.00% Exact UTR3 Pred Count 0.00 Exact UTR3 Ann Count 0.00 Exact UTR3 Specificity 0.00% Exact UTR3 Sensitivity 0.00% Exact Intron Pred Count 10.00 Exact Intron Ann Count 10.00 Exact Intron Specificity 41.67% Exact Intron Sensitivity 55.56% Exact Exon Pred Count 11.00 Exact Exon Ann Count 11.00 Exact Exon Specificity 45.83% Exact Exon Sensitivity 61.11% Start Codon Pred Count 3.00 Start Codon Ann Count 3.00 Start Codon Specificity 12.50% Start Codon Sensitivity 16.67% Stop Codon Pred Count 8.00 Stop Codon Ann Count 9.00 Stop Codon Specificity 33.33% Stop Codon Sensitivity 50.00% Start Stop Pred Count 0.00 Start Stop Ann Count 0.00 Start Stop Specificity 0.00% Start Stop Sensitivity 0.00% Single Exon Count 507.00 Ann Count 224.00 Average Length 893.39 Median Length 699.00 Total Length 452949.00 Average Coding Length 890.39 Median Coding Length 696.00 Total Coding Length 451428.00 Average Score 0.98 Total Score 494.95 Ave Exons Per 1.00 Med Exons Per 1.00 Total Exons 507.00 Consistent Pred Count 167.00 Consistent Ann Count 167.00 Consistent Specificity 32.94% Consistent Sensitivity 74.55% Exact Pred Count 167.00 Exact Ann Count 167.00 Exact Specificity 32.94% Exact Sensitivity 74.55% Full Exact Pred Count 0.00 Full Exact Ann Count 0.00 Full Exact Specificity 0.00% Full Exact Sensitivity 0.00% Genomic Overlap Pred Count 204.00 Genomic Overlap Ann Count 204.00 Genomic Overlap Specificity 40.24% Genomic Overlap Sensitivity 91.07% CDS Overlap Pred Count 185.00 CDS Overlap Ann Count 202.00 CDS Overlap Specificity 36.49% CDS Overlap Sensitivity 90.18% All Introns Pred Count 0.00 All Introns Ann Count 0.00 All Introns Specificity 0.00% All Introns Sensitivity 0.00% Exact UTR5 Pred Count 1.00 Exact UTR5 Ann Count 1.00 Exact UTR5 Specificity 0.20% Exact UTR5 Sensitivity 0.45% Exact UTR3 Pred Count 0.00 Exact UTR3 Ann Count 0.00 Exact UTR3 Specificity 0.00% Exact UTR3 Sensitivity 0.00% Exact Intron Pred Count 0.00 Exact Intron Ann Count 0.00 Exact Intron Specificity 0.00% Exact Intron Sensitivity 0.00% Exact Exon Pred Count 167.00 Exact Exon Ann Count 167.00 Exact Exon Specificity 32.94% Exact Exon Sensitivity 74.55% Start Codon Pred Count 169.00 Start Codon Ann Count 171.00 Start Codon Specificity 33.33% Start Codon Sensitivity 76.34% Stop Codon Pred Count 183.00 Stop Codon Ann Count 192.00 Stop Codon Specificity 36.09% Stop Codon Sensitivity 85.71% Start Stop Pred Count 167.00 Start Stop Ann Count 167.00 Start Stop Specificity 32.94% Start Stop Sensitivity 74.55% Exon All Count 10296.00 Ann Count 3809.00 Average Length 398.72 Median Length 214.00 Total Length 4105219.00 Average Score 0.99 Total Score 10193.15 Correct Pred Count 3430.00 Correct Ann Count 3430.00 Correct Specificity 33.31% Correct Sensitivity 90.05% Overlap Pred Count 3686.00 Overlap Ann Count 3706.00 Overlap Specificity 35.80% Overlap Sensitivity 97.30% Overlap 80p Pred Count 3583.00 Overlap 80p Ann Count 3589.00 Overlap 80p Specificity 34.80% Overlap 80p Sensitivity 94.22% Splice 5 Pred Count 3501.00 Splice 5 Ann Count 3505.00 Splice 5 Specificity 34.00% Splice 5 Sensitivity 92.02% Splice 3 Pred Count 3607.00 Splice 3 Ann Count 3619.00 Splice 3 Specificity 35.03% Splice 3 Sensitivity 95.01% Initial Count 2257.00 Ann Count 937.00 Average Length 264.64 Median Length 132.00 Total Length 597288.00 Average Score 0.98 Total Score 2217.37 Correct Pred Count 791.00 Correct Ann Count 790.00 Correct Specificity 35.05% Correct Sensitivity 84.31% Overlap Pred Count 868.00 Overlap Ann Count 903.00 Overlap Specificity 38.46% Overlap Sensitivity 96.37% Overlap 80p Pred Count 831.00 Overlap 80p Ann Count 846.00 Overlap 80p Specificity 36.82% Overlap 80p Sensitivity 90.29% Splice 5 Pred Count 799.00 Splice 5 Ann Count 796.00 Splice 5 Specificity 35.40% Splice 5 Sensitivity 84.95% Splice 3 Pred Count 861.00 Splice 3 Ann Count 896.00 Splice 3 Specificity 38.15% Splice 3 Sensitivity 95.62% Internal Count 5267.00 Ann Count 1725.00 Average Length 381.28 Median Length 212.00 Total Length 2008199.00 Average Score 0.99 Total Score 5240.02 Correct Pred Count 1622.00 Correct Ann Count 1624.00 Correct Specificity 30.80% Correct Sensitivity 94.14% Overlap Pred Count 1736.00 Overlap Ann Count 1712.00 Overlap Specificity 32.96% Overlap Sensitivity 99.25% Overlap 80p Pred Count 1688.00 Overlap 80p Ann Count 1676.00 Overlap 80p Specificity 32.05% Overlap 80p Sensitivity 97.16% Splice 5 Pred Count 1654.00 Splice 5 Ann Count 1663.00 Splice 5 Specificity 31.40% Splice 5 Sensitivity 96.41% Splice 3 Pred Count 1696.00 Splice 3 Ann Count 1673.00 Splice 3 Specificity 32.20% Splice 3 Sensitivity 96.99% Terminal Count 2265.00 Ann Count 924.00 Average Length 462.83 Median Length 274.00 Total Length 1048304.00 Average Score 0.99 Total Score 2240.81 Correct Pred Count 850.00 Correct Ann Count 850.00 Correct Specificity 37.53% Correct Sensitivity 91.99% Overlap Pred Count 897.00 Overlap Ann Count 890.00 Overlap Specificity 39.60% Overlap Sensitivity 96.32% Overlap 80p Pred Count 883.00 Overlap 80p Ann Count 874.00 Overlap 80p Specificity 38.98% Overlap 80p Sensitivity 94.59% Splice 5 Pred Count 879.00 Splice 5 Ann Count 876.00 Splice 5 Specificity 38.81% Splice 5 Sensitivity 94.81% Splice 3 Pred Count 867.00 Splice 3 Ann Count 859.00 Splice 3 Specificity 38.28% Splice 3 Sensitivity 92.97% Single Count 507.00 Ann Count 224.00 Average Length 890.39 Median Length 696.00 Total Length 451428.00 Average Score 0.98 Total Score 494.95 Correct Pred Count 167.00 Correct Ann Count 167.00 Correct Specificity 32.94% Correct Sensitivity 74.55% Overlap Pred Count 185.00 Overlap Ann Count 202.00 Overlap Specificity 36.49% Overlap Sensitivity 90.18% Overlap 80p Pred Count 181.00 Overlap 80p Ann Count 194.00 Overlap 80p Specificity 35.70% Overlap 80p Sensitivity 86.61% Splice 5 Pred Count 169.00 Splice 5 Ann Count 171.00 Splice 5 Specificity 33.33% Splice 5 Sensitivity 76.34% Splice 3 Pred Count 183.00 Splice 3 Ann Count 192.00 Splice 3 Specificity 36.09% Splice 3 Sensitivity 85.71% UTR3 Count 0.00 Ann Count 1220.00 Average Length 0.00 Median Length 0.00 Total Length 0.00 Average Score 0.00 Total Score 0.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% Overlap Pred Count 0.00 Overlap Ann Count 0.00 Overlap Specificity 0.00% Overlap Sensitivity 0.00% Overlap 80p Pred Count 0.00 Overlap 80p Ann Count 0.00 Overlap 80p Specificity 0.00% Overlap 80p Sensitivity 0.00% Splice 5 Pred Count 0.00 Splice 5 Ann Count 0.00 Splice 5 Specificity 0.00% Splice 5 Sensitivity 0.00% Splice 3 Pred Count 0.00 Splice 3 Ann Count 0.00 Splice 3 Specificity 0.00% Splice 3 Sensitivity 0.00% UTR5 Count 0.00 Ann Count 1534.00 Average Length 0.00 Median Length 0.00 Total Length 0.00 Average Score 0.00 Total Score 0.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% Overlap Pred Count 0.00 Overlap Ann Count 0.00 Overlap Specificity 0.00% Overlap Sensitivity 0.00% Overlap 80p Pred Count 0.00 Overlap 80p Ann Count 0.00 Overlap 80p Specificity 0.00% Overlap 80p Sensitivity 0.00% Splice 5 Pred Count 0.00 Splice 5 Ann Count 0.00 Splice 5 Specificity 0.00% Splice 5 Sensitivity 0.00% Splice 3 Pred Count 0.00 Splice 3 Ann Count 0.00 Splice 3 Specificity 0.00% Splice 3 Sensitivity 0.00% Intron Count 7516.00 Ann Count 2648.00 Average Length 599.58 Median Length 74.00 Total Length 4506448.00 Average Score 0.00 Total Score 0.00 Correct Pred Count 2460.00 Correct Ann Count 2460.00 Correct Specificity 32.73% Correct Sensitivity 92.90% Overlap Pred Count 2649.00 Overlap Ann Count 2603.00 Overlap Specificity 35.24% Overlap Sensitivity 98.30% Overlap 80p Pred Count 2486.00 Overlap 80p Ann Count 2488.00 Overlap 80p Specificity 33.08% Overlap 80p Sensitivity 93.96% Splice 5 Pred Count 2553.00 Splice 5 Ann Count 2556.00 Splice 5 Specificity 33.97% Splice 5 Sensitivity 96.53% Splice 3 Pred Count 2527.00 Splice 3 Ann Count 2537.00 Splice 3 Specificity 33.62% Splice 3 Sensitivity 95.81% InframeOptional Count 0.00 Ann Count 1.00 Average Length 0.00 Median Length 0.00 Total Length 0.00 Average Score 0.00 Total Score 0.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% Overlap Pred Count 0.00 Overlap Ann Count 0.00 Overlap Specificity 0.00% Overlap Sensitivity 0.00% Overlap 80p Pred Count 0.00 Overlap 80p Ann Count 0.00 Overlap 80p Specificity 0.00% Overlap 80p Sensitivity 0.00% Splice 5 Pred Count 0.00 Splice 5 Ann Count 0.00 Splice 5 Specificity 0.00% Splice 5 Sensitivity 0.00% Splice 3 Pred Count 0.00 Splice 3 Ann Count 0.00 Splice 3 Specificity 0.00% Splice 3 Sensitivity 0.00% FrameshiftOptional Count 0.00 Ann Count 0.00 Average Length 0.00 Median Length 0.00 Total Length 0.00 Average Score 0.00 Total Score 0.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% Overlap Pred Count 0.00 Overlap Ann Count 0.00 Overlap Specificity 0.00% Overlap Sensitivity 0.00% Overlap 80p Pred Count 0.00 Overlap 80p Ann Count 0.00 Overlap 80p Specificity 0.00% Overlap 80p Sensitivity 0.00% Splice 5 Pred Count 0.00 Splice 5 Ann Count 0.00 Splice 5 Specificity 0.00% Splice 5 Sensitivity 0.00% Splice 3 Pred Count 0.00 Splice 3 Ann Count 0.00 Splice 3 Specificity 0.00% Splice 3 Sensitivity 0.00% Nuc All Count 4105219.00 Ann Count 1509298.00 Correct Pred Count 1478515.00 Correct Ann Count 1478515.00 Correct Specificity 36.02% Correct Sensitivity 97.96% Initial Count 597288.00 Ann Count 251422.00 Correct Pred Count 232026.00 Correct Ann Count 244783.00 Correct Specificity 38.85% Correct Sensitivity 97.36% Internal Count 2008199.00 Ann Count 596183.00 Correct Pred Count 611220.00 Correct Ann Count 593151.00 Correct Specificity 30.44% Correct Sensitivity 99.49% Terminal Count 1048304.00 Ann Count 438049.00 Correct Pred Count 437573.00 Correct Ann Count 431017.00 Correct Specificity 41.74% Correct Sensitivity 98.39% Single Count 451428.00 Ann Count 228048.00 Correct Pred Count 197696.00 Correct Ann Count 213968.00 Correct Specificity 43.79% Correct Sensitivity 93.83% UTR3 Count 0.00 Ann Count 388507.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% UTR5 Count 0.00 Ann Count 245286.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% Intron Count 4506448.00 Ann Count 1786495.00 Correct Pred Count 1320925.00 Correct Ann Count 1320925.00 Correct Specificity 29.31% Correct Sensitivity 73.94% InframeOptional Count 0.00 Ann Count 30.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% FrameshiftOptional Count 0.00 Ann Count 0.00 Correct Pred Count 0.00 Correct Ann Count 0.00 Correct Specificity 0.00% Correct Sensitivity 0.00% Signal Splice Acceptor Count 7532.00 Ann Count 2649.00 Correct Pred Count 2533.00 Correct Ann Count 2539.00 Correct Specificity 33.63% Correct Sensitivity 95.85% Splice Donor Count 7524.00 Ann Count 2661.00 Correct Pred Count 2557.00 Correct Ann Count 2568.00 Correct Specificity 33.98% Correct Sensitivity 96.51% Start Codon Count 2764.00 Ann Count 1163.00 Correct Pred Count 967.00 Correct Ann Count 969.00 Correct Specificity 34.99% Correct Sensitivity 83.32% Stop Codon Count 2772.00 Ann Count 1168.00 Correct Pred Count 1052.00 Correct Ann Count 1069.00 Correct Specificity 37.95% Correct Sensitivity 91.52% Tue Oct 2 17:28:47 PDT 2007