CONTRAlign is available as public domain software. CONTRAlign was developed on Red Hat Linux, Fedora Core 4. The source code is known to compile correctly using either GCC or the Intel C++ Compiler. If you have any trouble compiling or running the software on your system, please let us know.

Current version: 2.01

Previous version: 1.04

  • Source code (C++)
  • A C++ program for scoring a test alignment against a reference alignment
  • An archive containing different parameters trained automatically using CONTRAlign
  • An archive containing different topologies for CONTRAlign
  • An archive containing the dataset used for benchmarking CONTRAlign