Zebrafish (danRer4) Predictions
Download Predictions (zipped GTF)
These are de novo predictions using the following informants (UCSC genome IDs):
- hg18
- mm8
- rn4
- galGal3
- fr2
- tetNig1
- oryLat1
- xenTro2
The set of known genes was RefSeq, containing 5942 genes and 6831 transcripts. CONTRAST predicts 45707 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.
| Gene Sensitivity | 49.93% |
| Gene Specificity | 6.85% |
| Exon Sensitivity | 88.84% |
| Exon Specificity | 15.25% |
| Nucleotide Sensitivity | 95.27% |
| Nucleotide Specificity | 14.06% |