Zebrafish (danRer4) Predictions

Download Predictions (zipped GTF)

These are de novo predictions using the following informants (UCSC genome IDs):

  • hg18
  • mm8
  • rn4
  • galGal3
  • fr2
  • tetNig1
  • oryLat1
  • xenTro2

The set of known genes was RefSeq, containing 5942 genes and 6831 transcripts. CONTRAST predicts 45707 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.

Estimated Accuracy
Gene Sensitivity49.93%
Gene Specificity6.85%
Exon Sensitivity88.84%
Exon Specificity15.25%
Nucleotide Sensitivity95.27%
Nucleotide Specificity14.06%

Full Eval Report