Chicken (galGal3) Predictions
Download Predictions (zipped GTF)
These are de novo predictions using the following informants (UCSC genome IDs):
- hg18
- mm8
- rn4
- equCab1
- monDom4
- ornAna1
- fr2
- danRer4
- xenTro2
- anoCar1
The set of known genes was RefSeq, containing 2196 genes and 2207 transcripts. CONTRAST predicts 15712 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.
| Gene Sensitivity | 42.86% |
| Gene Specificity | 6.05% |
| Exon Sensitivity | 89.35% |
| Exon Specificity | 11.19% |
| Nucleotide Sensitivity | 95.29% |
| Nucleotide Specificity | 10.88% |