Chicken (galGal3) Predictions

Download Predictions (zipped GTF)

These are de novo predictions using the following informants (UCSC genome IDs):

  • hg18
  • mm8
  • rn4
  • equCab1
  • monDom4
  • ornAna1
  • fr2
  • danRer4
  • xenTro2
  • anoCar1

The set of known genes was RefSeq, containing 2196 genes and 2207 transcripts. CONTRAST predicts 15712 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.

Estimated Accuracy
Gene Sensitivity42.86%
Gene Specificity6.05%
Exon Sensitivity89.35%
Exon Specificity11.19%
Nucleotide Sensitivity95.29%
Nucleotide Specificity10.88%

Full Eval Report