Mouse (mm8) Predictions

Download Predictions (zipped GTF)

These are de novo predictions using the following informants (UCSC genome IDs):

  • rn4
  • oryCun1
  • hg18
  • panTro2
  • rheMac2
  • canFam2
  • bosTau2
  • dasNov1
  • loxAfr1
  • echTel1
  • monDom4
  • galGal2
  • xenTro2
  • danRer4
  • tetNig1
  • fr1

The set of known genes was CCDS, containing 12961 genes and 13336 transcripts. CONTRAST predicts 25575 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.

Estimated Accuracy
Gene Sensitivity63.63%
Gene Specificity31.77%
Exon Sensitivity93.61%
Exon Specificity50.10%
Nucleotide Sensitivity97.44%
Nucleotide Specificity50.28%

Full Eval Report