Mouse (mm8) Predictions
Download Predictions (zipped GTF)
These are de novo predictions using the following informants (UCSC genome IDs):
- rn4
- oryCun1
- hg18
- panTro2
- rheMac2
- canFam2
- bosTau2
- dasNov1
- loxAfr1
- echTel1
- monDom4
- galGal2
- xenTro2
- danRer4
- tetNig1
- fr1
The set of known genes was CCDS, containing 12961 genes and 13336 transcripts. CONTRAST predicts 25575 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.
| Gene Sensitivity | 63.63% |
| Gene Specificity | 31.77% |
| Exon Sensitivity | 93.61% |
| Exon Specificity | 50.10% |
| Nucleotide Sensitivity | 97.44% |
| Nucleotide Specificity | 50.28% |