Rat (rn4) Predictions

Download Predictions (zipped GTF)

These are de novo predictions using the following informants (UCSC genome IDs):

  • hg18
  • panTro2
  • rheMac2
  • mm9
  • equCab1
  • bosTau2
  • canFam2
  • monDom4
  • galGal3
  • danRer4
  • xenTro2

The set of known genes was RefSeq, containing 6636 genes and 6819 transcripts. CONTRAST predicts 22011 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.

Estimated Accuracy
Gene Sensitivity57.29%
Gene Specificity17.84%
Exon Sensitivity90.32%
Exon Specificity26.74%
Nucleotide Sensitivity94.71%
Nucleotide Specificity25.91%

Full Eval Report