Rat (rn4) Predictions
Download Predictions (zipped GTF)
These are de novo predictions using the following informants (UCSC genome IDs):
- hg18
- panTro2
- rheMac2
- mm9
- equCab1
- bosTau2
- canFam2
- monDom4
- galGal3
- danRer4
- xenTro2
The set of known genes was RefSeq, containing 6636 genes and 6819 transcripts. CONTRAST predicts 22011 genes in this genome. The accuracy of these predictions was estimated using a holdout set. Please note the specificity measures are (possibly severe) underestimates, as all predictions not matching a known annotation were counted as incorrect.
| Gene Sensitivity | 57.29% |
| Gene Specificity | 17.84% |
| Exon Sensitivity | 90.32% |
| Exon Specificity | 26.74% |
| Nucleotide Sensitivity | 94.71% |
| Nucleotide Specificity | 25.91% |